Structure of PDB 7yo6 Chain A

Receptor sequence
>7yo6A (length=756) Species: 5353 (Lentinula edodes) [Search protein sequence]
QWPAPLANGGKSWASAFKKAKATVTEMTVEELANITSGVIGLCSGVTGAV
TRLGIPEFCLQDGPIGPRGVHGSSQFPAGLTVAATWDRTLMYARARGMGQ
EFHDQGVHLALAPVTGGPLGRTPLNGRGWEGTFADPYACGEASYLSVKGL
TDAGVATVSKHWIAYEQETSRNLYIDIDGVSQADIQLPISSNVDDLTMHE
LYMWSFAEAVRAGTNHIMCSYNRINNTHSCSNAKGLNQLLKTELNFQGGV
VSDWGGQWDSVPAAENGLDVAMPGKGFLGALGDFWGATLVELINNGTVSE
DLVRDKAVRILTGYYYLGQDTNPPPPFVYNTIGAPTLNATSGYRNVRKPG
TAELIKEIGSASVTLLKNTGSLPLKHPQRIAVLGNDATYNVLGPNACGLA
NSACDIDNLNGTLTTGGGSGSALSPYTITPLEALQKRAIEDNAEIAAVVA
NSNTTTGAEDAIAALLPDADVTFVFLNRYSEEGADAPDFSLGGDGDNLMD
LAVTYSSNVVVVIHTTGVVDIEKWADNPNVTAILVAYLPGQEAGNSLVPV
LYGDVAPSGKLPWTWGKSIDDYVPNGVVYTDAYSPQSNFTEGVFIDYRWF
DKMGITPRYEFGFGLSYTTFTYSNLIVDHGRWAKDYSSVMETAEPFAEWD
GTNSLYDVIFTVFATITNTGNLTGSEVAQLYISIPGDNQPVRQLRGFDKI
KDLPVGDSAVVTFPIRRKDVSSWSVVDQLWYVPNGDFLISVGGSSRDLPL
NTTWTP
3D structure
PDB7yo6 Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose
ChainA
Resolution2.54 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BKR A L220 I222 I224 V227 W301 F324 L328 T383 G465 S466 L173 I175 I177 V180 W254 F277 L281 T336 G418 S419
BS02 XYZ A D109 L158 R174 K207 M265 Y268 D300 W301 S466 E529 D62 L111 R127 K160 M218 Y221 D253 W254 S419 E482
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:7yo6, PDBe:7yo6, PDBj:7yo6
PDBsum7yo6
PubMed
UniProtG8GLP2

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