Structure of PDB 7w9k Chain A
Receptor sequence
>7w9kA (length=1413) Species:
9606
(Homo sapiens) [
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GPQSFVHFTKQSLALIEQRIAERKSKEPKPSSDLEAGKQLPFIYGDIPPG
MVSEPLEDLDPYYADKKTFIVLNKGKTIFRFNATPALYMLSPFSPLRRIS
IKILVHSLFSMLIMCTILTNCIFMTMNNPPDWTKNVEYTFTGIYTFESLV
KILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVNNVSALRTFRVLRA
LKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNL
KHKCFRNSLENNETLESIMNTLESEEDFRKYFYYLEGSKDALLCGFSTDS
GQCPEGYTCVKIGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQQTL
RAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKEL
EFQQMLDRLKKEQEPYWIKFKKCIYFIVMDPFVDLAITICIVLNTLFMAM
EHHPMTEEFKNVLAIGNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDS
LIVTLSLVELFLLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKSYKECVCKINDDCTLPRWHMNDFFHSFL
IVFRVLCGEWIETMWDCMEVAGQAMCLIVYMMVMVIGNLVVLNLFLALLL
SSFSSDNLTAIEEDPDANNLQIAVTRIKKGINYVKQTLREFILKAFGKIW
WNIRKTCYKIVEHSWFESFIVLMILLSSGALAFEDIYIERKKTIKIILEY
ADKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFLIVDVSLVTLVANTL
GYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVC
LIFWLIFSIMGVNLFAGKFYECINTTDGSRFPASQVPNRSECFALMNVSQ
NVRWKNLKVNFDNVGLGYLSLLQVATFKGWTIIMYAAVDSVNVDKQPKYE
YSLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQ
KKYYNAMKKLGSKKPQKPIPRPGNKIQGCIFDLVTNQAFDISIMVLICLN
MVTMMVEKEGQSQHMTEVLYWINVVFIILFTGECVLKLISLRHYYFTVGW
NIFDFVVVIISIVGMFLADLIETYFVSPTLFRVIRLARIGRILRLVKGAK
GIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEDGINDM
FNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPKKVHPGSSVEG
DCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDD
FEMFYEVWEKFDPDATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDL
PMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYE
PITTTLKRKQEDV
3D structure
PDB
7w9k
High-resolution structures of human Na v 1.7 reveal gating modulation through alpha-pi helical transition of S6 IV.
Chain
A
Resolution
2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number
?
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
P5S
A
W1179 R1182 G1249 Y1250
W701 R704 G771 Y772
BS02
Y01
A
T1255 W1260
T777 W782
BS03
Y01
A
Y1250 K1251 F1254
Y772 K773 F776
BS04
Y01
A
T758 W849 P850 E981 I1330
T445 W531 P532 E663 I852
BS05
9Z9
A
L398 A402 E406 F963 L964 L968 I1453 I1457 I1759 F1763
L377 A381 E385 F645 L646 L650 I975 I979 I1281 F1285
BS06
Y01
A
N209 A212 T215 M950
N188 A191 T194 M632
BS07
LPE
A
M763 F772
M450 F459
BS08
LPE
A
P1733 S1734 F1738
P1255 S1256 F1260
BS09
1PW
A
M1322 T1695 T1696 I1745 F1748
M844 T1217 T1218 I1267 F1270
BS10
LPE
A
L1298 L1301 L1653 V1654 I1657 Y1658 F1661 F1738 Y1739
L820 L823 L1175 V1176 I1179 Y1180 F1183 F1260 Y1261
BS11
LPE
A
A1257 W1258 V1311 N1312 I1315
A779 W780 V833 N834 I837
BS12
P5S
A
G1489 W1578 F1581 R1631 L1634
G1011 W1100 F1103 R1153 L1156
BS13
LPE
A
F387 E1477 Q1478 Y1481 L1641 P1642 F1645
F366 E999 Q1000 Y1003 L1163 P1164 F1167
BS14
LPE
A
D320 K376 T377 M379 M1655
D299 K355 T356 M358 M1177
BS15
LPE
A
Y1215 T1683
Y737 T1205
BS16
LPE
A
A1210 F1211 L1653 F1684
A732 F733 L1175 F1206
BS17
LPE
A
F347 F351 M1529 M1533 L1623 A1627
F326 F330 M1051 M1055 L1145 A1149
BS18
LPE
A
W1179 R1182 Y1250
W701 R704 Y772
BS19
P5S
A
I1567 R1570 H1571
I1089 R1092 H1093
BS20
Y01
A
A762 H765 L1333 Y1396
A449 H452 L855 Y918
BS21
LPE
A
I1188 H1191 F1194
I710 H713 F716
Gene Ontology
Molecular Function
GO:0005216
monoatomic ion channel activity
GO:0005248
voltage-gated sodium channel activity
GO:0005261
monoatomic cation channel activity
GO:0005272
sodium channel activity
GO:0005515
protein binding
Biological Process
GO:0006811
monoatomic ion transport
GO:0006814
sodium ion transport
GO:0006954
inflammatory response
GO:0007623
circadian rhythm
GO:0009636
response to toxic substance
GO:0009791
post-embryonic development
GO:0019228
neuronal action potential
GO:0019233
sensory perception of pain
GO:0034220
monoatomic ion transmembrane transport
GO:0035725
sodium ion transmembrane transport
GO:0048266
behavioral response to pain
GO:0050965
detection of temperature stimulus involved in sensory perception of pain
GO:0050974
detection of mechanical stimulus involved in sensory perception
GO:0055085
transmembrane transport
GO:0086002
cardiac muscle cell action potential involved in contraction
GO:0098870
action potential propagation
Cellular Component
GO:0001518
voltage-gated sodium channel complex
GO:0005886
plasma membrane
GO:0016020
membrane
GO:0030424
axon
GO:0033268
node of Ranvier
GO:0034702
monoatomic ion channel complex
GO:0042995
cell projection
GO:0043005
neuron projection
GO:0043679
axon terminus
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:7w9k
,
PDBe:7w9k
,
PDBj:7w9k
PDBsum
7w9k
PubMed
35476982
UniProt
Q15858
|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha (Gene Name=SCN9A)
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