Structure of PDB 7vgc Chain A

Receptor sequence

>7vgcA (length=680) Species: 210427 (Microbulbifer arenaceous)

SHNYPDTATVDQQDDYFGTAVTDPYRWLEQQDSKLVKDWVTAQNDFSLPT
LKALPHWQKINDRLTELWQYERYGVPYKKAGQVFYEYNDGSWDQSVFYRT
ADIHKDGHVILDPRALSKDGTIAAKRYTVSPNGRYLAYGTSDGGTDWTDY
RVRDLKTRRMIPDHLTGIKFSDASWAKDESGFYYSRYPFKEDGSADDSKQ
VSVYFHKIGEPQSKDQLIYKITDHPTRNPGAQVSDDGKYLILGVFDGYDS
NGIYYKDLQDGESRVVKLLDDWDALYTYLGNQGKTFYFETNVDATNGRII
AIDIDKPQKDHWKILVPEQKDALQSASLIGGRFVLHYLEDAKSKVVVTDL
DGKQQYALKLPGMGTVEGFTGDPDDPETYYAFSNFLTPPSIYKLNVHSGN
SEIVKSPKYPADFSDYVVSQEFFTSKDGTRVPLFLVHKKGLKKYGKNPTL
LYGYGGFNAAQLPRFYTRFAGWLDMGGTFAMVNLRGGSEYGGAWHKAGTK
LQKQNVFDDFIGAAEWLIEEKITSPEKLGIMGRSNGGLLVGATEVQRPEL
FAVALPIVGVLDMLRYHTASANARQWSSDYGLSENKAEFNALYAYSPVHN
TKKGTCYPATLITTADRDDRVVPWHSYKFAASLQRDQGCDNPIYLAVETR
AGHGAGKPVWMQVEDFTNQYAFLADQLGLQ

3D structure

• PDB: 7vgc The structure and molecular dynamics of prolyl oligopeptidase from Microbulbifer arenaceous provide insights into catalytic and regulatory mechanisms.
• Chain: A
• Resolution: 2.722 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	ZPR	A	F198 F273 Y276 Y482 F485 S562 N563 N600 W604 Y608 R648 V649	F170 F245 Y248 Y454 F457 S534 N535 N572 W576 Y580 R620 V621

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Feb 17 01:50:25 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7vgc', asym_id = 'A', title = 'The structure and molecular dynamics of prolyl o...sights into catalytic and regulatory mechanisms. '

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7vgc', asym_id='A', title='The structure and molecular dynamics of prolyl o...sights into catalytic and regulatory mechanisms. ')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0004252,0006508,0008236', uniprot = '', pdbid = '7vgc', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004252,0006508,0008236', uniprot='', pdbid='7vgc', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>