Structure of PDB 7ug9 Chain A

Receptor sequence
>7ug9A (length=206) Species: 562 (Escherichia coli) [Search protein sequence]
IYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEI
SRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERWC
TIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQ
CQQSPNERTQLAALARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVEGV
WQLWEQ
3D structure
PDB7ug9 Identification of a novel deFADding activity in human, yeast and bacterial 5' to 3' exoribonucleases.
ChainA
Resolution1.69 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.13.-
3.1.3.97: 3',5'-nucleoside bisphosphate phosphatase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN A E72 H83 H198 E64 H75 H120
BS02 MN A H15 D20 H45 H257 H7 D12 H37 H179
BS03 MN A H13 H15 E72 D255 H5 H7 E64 D177
BS04 SO4 A H15 H45 E72 H83 H198 R201 D255 H257 H7 H37 E64 H75 H120 R123 D177 H179
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0004527 exonuclease activity
GO:0004534 5'-3' RNA exonuclease activity
GO:0008252 nucleotidase activity
GO:0030145 manganese ion binding
GO:0035312 5'-3' DNA exonuclease activity
GO:0046872 metal ion binding
GO:0097657 3',5'-nucleotide bisphosphate phosphatase activity
Biological Process
GO:0000470 maturation of LSU-rRNA
GO:0000481 maturation of 5S rRNA
GO:0006259 DNA metabolic process
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA

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Molecular Function
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Biological Process
External links
PDB RCSB:7ug9, PDBe:7ug9, PDBj:7ug9
PDBsum7ug9
PubMed35904778
UniProtP77766|RNM_ECOLI 5'-3' exoribonuclease Rnm (Gene Name=rnm)

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