Structure of PDB 7qys Chain A

Receptor sequence
>7qysA (length=290) Species: 223283 (Pseudomonas syringae pv. tomato str. DC3000) [Search protein sequence]
MKIAVLSRNPRLYSTRRLVEAGIERGHEMVVIDTLRAYMNIASHKPQIHY
RGKPLEGFDAVIPRIGASVTFYGCAVLRQFEMMGVFPLNESVAIARSRDK
LRSLQLLSRRGIGLPVTGFAHSPDDIPDLIQMVNGAPLVIKVLEGTQGIG
VVLCETATAAESVIEAFMGLKQDIMVQEYIKEAGGADIRCFVVGDKVIAS
MKRQAKPGEFRSNLHRGGSASLIKITPEERMTALRAAKVMGLSVAGVDIL
RSNHGPLVMEVNSSPGLEGIEVTTSKDVAGMIIEYLEKNS
3D structure
PDB7qys Structural insights into the mechanism of adaptive ribosomal modification by Pseudomonas RimK.
ChainA
Resolution2.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 6.3.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP A V139 E178 Y179 I180 S212 L250 M259 E260 V139 E178 Y179 I180 S212 L250 M259 E260
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0016881 acid-amino acid ligase activity
GO:0018169 ribosomal S6-glutamic acid ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0009432 SOS response
GO:0018410 C-terminal protein amino acid modification
GO:0036211 protein modification process
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7qys, PDBe:7qys, PDBj:7qys
PDBsum7qys
PubMed36134899
UniProtQ88AZ9|RIMK_PSESM Probable alpha-L-glutamate ligase (Gene Name=rimK)

[Back to BioLiP]