Structure of PDB 7pod Chain A

Receptor sequence
>7podA (length=273) Species: 171101 (Streptococcus pneumoniae R6) [Search protein sequence]
AAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGL
SGYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEV
GKKYYSADGLHFDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSL
LENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAY
DTTPYLSAKTFDDVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYAS
DPYWGEKIASVMMKINEKLGGKD
3D structure
PDB7pod Molecular basis of the final step of cell division in Streptococcus pneumoniae.
ChainA
Resolution1.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.96: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMV A E585 D657 E179 D251
BS02 AMU A Y429 T604 Y606 D607 W630 Y635 E653 Y654 Y23 T198 Y200 D201 W224 Y229 E247 Y248
BS03 CA A D421 D423 E425 D15 D17 E19
Gene Ontology
Molecular Function
GO:0004040 amidase activity

View graph for
Molecular Function
External links
PDB RCSB:7pod, PDBe:7pod, PDBj:7pod
PDBsum7pod
PubMed37418323
UniProtP59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosaminidase (Gene Name=lytB)

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