Structure of PDB 7p9i Chain A

Receptor sequence
>7p9iA (length=271) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
SYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLTG
EYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPLIARQLLR
EQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRG
LILIDPPYEMKTDYQAVVSGIAEGYKRFATGTYALWYPVVLRQQIKRMIH
DLEATGIRKILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPW
LHSKLVPAGTGHATVSWIVPE
3D structure
PDB7p9i Synthesis of RNA-cofactor conjugates and structural exploration of RNA recognition by an m6A RNA methyltransferase.
ChainA
Resolution1.594 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.1.1.266: 23S rRNA (adenine(2030)-N(6))-methyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A F8 H9 H120 P165 Y167 W195 M235 F6 H7 H111 P156 Y158 W186 M226
BS02 6D6 A K18 H42 A43 G44 Y48 G99 S100 E118 D123 D164 P165 P166 E168 W195 K16 H40 A41 G42 Y46 G90 S91 E109 D114 D155 P156 P157 E159 W186
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0008168 methyltransferase activity
GO:0008649 rRNA methyltransferase activity
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity
GO:0036307 23S rRNA (adenine(2030)-N(6))-methyltransferase activity
Biological Process
GO:0006364 rRNA processing
GO:0015976 carbon utilization
GO:0032259 methylation
GO:0070475 rRNA base methylation
Cellular Component
GO:0005829 cytosol

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Cellular Component
External links
PDB RCSB:7p9i, PDBe:7p9i, PDBj:7p9i
PDBsum7p9i
PubMed35580049
UniProtP37634|RLMJ_ECOLI Ribosomal RNA large subunit methyltransferase J (Gene Name=rlmJ)

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