Structure of PDB 7m75 Chain A
Receptor sequence
>7m75A (length=740) Species:
197221
(Thermosynechococcus vestitus BP-1) [
Search protein sequence
]
RVVVDNDPVPTSFEKWAKPGHFDRTLARGPQTTTWIWNLHALAHDFDTHT
SDLEDISRKIFSAHFGHLAVVFIWLSGMYFHGAKFSNYEAWLADPTGIKP
SAQVVWPIVGQGILNGDVGGGFHGIQITSGLFQLWRASGITNEFQLYCTA
IGGLVMAGLMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSLAW
AGHQIHVSLPINKLLDAGVAAKDIPLPHEFILNPSLMAELYPKVDWGFFS
PFFTFNWAAYSDFLTFNGGLNPVTGGLWLSDTAHHHLAIAVLFIIAGHMY
RTNWGIGHSLKEILEAHKGPFTGAGHKGLYEVLTTSWHAQLAINLAMMGS
LSIIVAQHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLVVGGAAHGAIF
MVRDYDPAMNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYVHNDTM
RAFGRPQDMFSDTGIQLQPVFAQWVQNLHTLAPGGTAPNAAATASVAFGG
DVVAVGGKVAMMPIVLGTADFMVHHIHAFTIHVTVLILLKGVLFARSSRL
IPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSW
KMQSDVWGTVAPDGTVSHITGGNFAQSAITINGWLRDFLWAQASQVIGSY
GSALSAYGLLFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP
AIQPRALSIIQGRAVGVAHYLLGGIATTWAFFLARIISVG
3D structure
PDB
7m75
Room temperature XFEL crystallography reveals asymmetry in the vicinity of the two phylloquinones in photosystem I.
Chain
A
Resolution
2.75 Å
3D
structure
[
Spin on
]
[
Spin off
]
[
Reset orientation
]
[
High quality
]
[
Low quality
]
[
White background
]
[
Black background
]
[
Download
]
[
Download structure with residue number starting from 1
]
Enzymatic activity
Enzyme Commision number
1.97.1.12
: photosystem I.
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
CL0
A
Y459 Y603 N604 S607 F611 L654 F676 H680 W683 Y735 T742 T743 F746
Y444 Y588 N589 S592 F596 L639 F661 H665 W668 Y720 T727 T728 F731
BS02
CLA
A
F456 F544 W601 N604 I646 Y735
F441 F529 W586 N589 I631 Y720
BS03
CLA
A
F681 A684 F685 M688 Y696 W697
F666 A669 F670 M673 Y681 W682
BS04
CLA
A
W28 F34 A55 H56 H61
W16 F22 A43 H44 H49
BS05
CLA
A
H56 F58 I72 A75 H76 H79 L80 V83 F84 W352 L356 N359
H44 F46 I60 A63 H64 H67 L68 V71 F72 W337 L341 N344
BS06
CLA
A
H79 W86
H67 W74
BS07
CLA
A
G89 F92 H93 F97 W118
G77 F80 H81 F85 W106
BS08
CLA
A
M90 Q115 I139 T140 S141 A671 Y672
M78 Q103 I127 T128 S129 A656 Y657
BS09
CLA
A
W118 Q123
W106 Q111
BS10
CLA
A
F77 L171 F174 A175 F178 H179
F65 L159 F162 A163 F166 H167
BS11
CLA
A
S24 F25 W28 H33 K71 S74 L173 G176 W177 Y180 H181
S12 F13 W16 H21 K59 S62 L161 G164 W165 Y168 H169
BS12
CLA
A
R13 V14 W189 N192 H199 W319
R1 V2 W177 N180 H187 W304
BS13
CLA
A
F73 H76 F77 M172 W189 F190 M196 H199 H200 L204
F61 H64 F65 M160 W177 F178 M184 H187 H188 L192
BS14
CLA
A
G151 I152 Q157 C160 T161 A211 W212 H215 V219 P239 H240
G139 I140 Q145 C148 T149 A199 W200 H203 V207 P227 H228
BS15
CLA
A
H218 G259 F260 F267 Y275
H206 G247 F248 F252 Y260
BS16
CLA
A
C160 H240 I243
C148 H228 I231
BS17
CLA
A
W272 L279 H299 L302 A303 V306 N504
W257 L264 H284 L287 A288 V291 N489
BS18
CLA
A
F281 D296 H299 H300 A303 M377 A509
F266 D281 H284 H285 A288 M362 A494
BS19
CLA
A
W212 T297 H300 H301 I304 F308 L366 V370 M374 P379 Y380
W200 T282 H285 H286 I289 F293 L351 V355 M359 P364 Y365
BS20
CLA
A
A202 H313 T317 W319
A190 H298 T302 W304
BS21
CLA
A
L201 A311 M314 Y315 I328 M362
L189 A296 M299 Y300 I313 M347
BS22
CLA
A
I310 H313 M314 I321 G322 H323
I295 H298 M299 I306 G307 H308
BS23
CLA
A
H323 H332
H308 H317
BS24
CLA
A
H332 H341 V429
H317 H326 V414
BS25
CLA
A
M196 L197 H200 L348 T349 W352 Q355 I358 N359 M363
M184 L185 H188 L333 T334 W337 Q340 I343 N344 M348
BS26
CLA
A
I368 I369 Q372 V405 V550
I353 I354 Q357 V390 V535
BS27
CLA
A
L366 Q372 H373 Y375 A376 M377 F513
L351 Q357 H358 Y360 A361 M362 F498
BS28
CLA
A
W86 S141 S392 T395 H396 W399 W744
W74 S129 S377 T380 H381 W384 W729
BS29
CLA
A
G142 Y380 L393 H396 H397 I400
G130 Y365 L378 H381 H382 I385
BS30
CLA
A
H52 A53 H56 D57 L356 L360 G407 H411 I414 R418 R575 W592
H40 A41 H44 D45 L341 L345 G392 H396 I399 R403 R560 W577
BS31
CLA
A
F336 T337 R432 V433 H436 I440 H443
F321 T322 R417 V418 H421 I425 H428
BS32
CLA
A
H443 W446
H428 W431
BS33
CLA
A
W446 I449 F450 F453 H454
W431 I434 F435 F438 H439
BS34
CLA
A
H461 M465 R470 D473 F475
H446 M450 R455 D458 F460
BS35
CLA
A
L493 H494 A497
L478 H479 A482
BS36
CLA
A
F281 T501 A502 P503
F266 T486 A487 P488
BS37
CLA
A
Q372 Y375 F486 V490 Q491 I529 L531 H539 V609 H612 F613
Q357 Y360 F471 V475 Q476 I514 L516 H524 V594 H597 F598
BS38
CLA
A
L451 P484 V485 F486 A487 F536 H539 H540
L436 P469 V470 F471 A472 F521 H524 H525
BS39
CLA
A
L444 H547
L429 H532
BS40
CLA
A
T45 I704 H708 V713 P715 P719
T33 I689 H693 V698 P700 P704
BS41
CLA
A
W49 F685 V730 H734
W37 F670 V715 H719
BS42
CLA
A
N445 W446 I449
N430 W431 I434
BS43
CLA
A
H332 K333 F336
H317 K318 F321
BS44
PQN
A
M688 F689 S692 W697 L722
M673 F674 S677 W682 L707
BS45
CLA
A
L674 L677 H680 F681 W683 A684
L659 L662 H665 F666 W668 A669
BS46
SF4
A
C578 C587 I724
C563 C572 I709
BS47
CLA
A
L650 W655
L635 W640
BS48
CLA
A
N445 I449 G452 F453 F544 I552 F600 W601
N430 I434 G437 F438 F529 I537 F585 W586
BS49
CLA
A
A467 F468
A452 F453
BS50
CLA
A
K710 L711
K695 L696
BS51
CLA
A
F268 F270
F253 F255
Gene Ontology
Molecular Function
GO:0000287
magnesium ion binding
GO:0009055
electron transfer activity
GO:0016168
chlorophyll binding
GO:0016491
oxidoreductase activity
GO:0046872
metal ion binding
GO:0051539
4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979
photosynthesis
Cellular Component
GO:0009522
photosystem I
GO:0009579
thylakoid
GO:0016020
membrane
GO:0031676
plasma membrane-derived thylakoid membrane
GO:0042651
thylakoid membrane
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:7m75
,
PDBe:7m75
,
PDBj:7m75
PDBsum
7m75
PubMed
34750381
UniProt
P0A405
|PSAA_THEVB Photosystem I P700 chlorophyll a apoprotein A1 (Gene Name=psaA)
[
Back to BioLiP
]