Structure of PDB 7lgp Chain A

Receptor sequence
>7lgpA (length=374) Species: 198214 (Shigella flexneri 2a str. 301) [Search protein sequence]
SCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMDFADTQNF
WAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMK
GSLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMAR
NERLDYCLVGEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLAD
NPVHRAAPFLNELVAIEWDQGNEFFPATSMQIANIQAGTGSNNVIPGELF
VQFNFRFSTELTDEMIKAQVLALLEKHQLRYTVDWWLSGQPFLTARGKLV
DAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMGAQVVELGPVNATIHKIN
ECVNAADLQLLARMYQRIMEQLVA
3D structure
PDB7lgp DapE enzyme from Shigella flexneri
ChainA
Resolution1.91 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.5.1.18: succinyl-diaminopimelate desuccinylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A H66 D99 E162 H65 D98 E161
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
GO:0009014 succinyl-diaminopimelate desuccinylase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0050897 cobalt ion binding
Biological Process
GO:0009085 lysine biosynthetic process
GO:0009089 lysine biosynthetic process via diaminopimelate
GO:0019877 diaminopimelate biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7lgp, PDBe:7lgp, PDBj:7lgp
PDBsum7lgp
PubMed
UniProtP0AED8|DAPE_SHIFL Succinyl-diaminopimelate desuccinylase (Gene Name=dapE)

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