Structure of PDB 7kgm Chain A

Receptor sequence
>7kgmA (length=512) Species: 637910 (Citrobacter rodentium ICC168) [Search protein sequence]
LEQSPVTGIMAGIKPLPEGIDIGSVRQQLLTGLPSGYTPAYMDQLTLLYA
AREMKPMWENRDAVRAFQQQLAEVAIAGFQPQFTRWVELLTDPAVSGQAR
DVVLSDAMMGYLQFVAGIPVNGNRWLYSNKPYKLATPALSVINQWQLALD
NGELPRFIASLAPAHPQYARMHQSLLALVGDSRPWPQLRSAATLRPGQWS
SDVPALREILKRSGMLPAAYDRELVAAVKQFQAWQGLGADGAIGPATRYW
MNVTPAQRAGGLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGSQVLA
SRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKLWNDPGYL
ERHGYTVMRSKDAIDPWQVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNM
PSDAIYLHDTPNHTLFSKDARALSSGCVRVNKASELANMLLQDAGWNDTR
ISDALKQGNTRYVTIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYDLTAR
SSAQIVEKAEQL
3D structure
PDB7kgm Structural and Cellular Insights into the l,d-Transpeptidase YcbB as a Therapeutic Target in Citrobacter rodentium, Salmonella Typhimurium, and Salmonella Typhi Infections.
ChainA
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 1RG A P437 Y516 S535 C537 P331 Y406 S425 C427
Gene Ontology
Molecular Function
GO:0004180 carboxypeptidase activity
GO:0016740 transferase activity
Biological Process
GO:0000270 peptidoglycan metabolic process
GO:0008360 regulation of cell shape
GO:0009252 peptidoglycan biosynthetic process
GO:0071555 cell wall organization

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Molecular Function
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Biological Process
External links
PDB RCSB:7kgm, PDBe:7kgm, PDBj:7kgm
PDBsum7kgm
PubMed33139287
UniProtD2TS62

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