Structure of PDB 7kdp Chain A

Receptor sequence
>7kdpA (length=638) Species: 10363 (Human herpesvirus 5 strain Towne) [Search protein sequence]
TTKYPYRVCSMAQGTDLIRFERNIVCTSMKPINEDLDEGIMVVYKRNIVA
HTFKVRVYQKVLTFRRSYAYIHTTYLLGSNTEYVAPPMWEIHHINSHSQC
YSSYSRVIAGTVFVAYHRDSYENKTMQLMPDDYSNTHSTRYVTVKDQWHS
RGSTWLYRETCNLNCMVTITTARSKYPYHFFATSTGDVVDISPFYNGTNR
NASYFGENADKFFIFPNYTIVSDFGRPNSALETHRLVAFLERADSVISWD
IQDEKNVTCQLTFWEASERTIRSEAEDSYHFSSAKMTATFLSKKQEVNMS
DSALDCVRDEAINKLQQIFNTSYNQTYEKYGNVSVFETTGGLVVFWQGIK
QQLQFTYDTLRGYINRALAQIAEAWCVDQRRTLEVFKELSKINPSAILSA
IYNKPIAARFMGDVLGLASCVTINQTSVKVLRDMNVKESPGRCYSRPVVI
FNFANSSYVQYGQLGEDNEILLGNHRTEECQLPSLKIFIAGNSAYEYVDY
LFKRMIDLSSISTVDSMIALDIDPLENTDFRVLELYSQKELRSSNVFDLE
EIMREFNSYKQRVKYVEDKVVDPLPPYLKGLDDLMSGLGAAGKAVGVAIG
AVGGAVASVVEGVATFLKNPFGAFTIILVAIAVVIIIY
3D structure
PDB7kdp Prefusion structure of human cytomegalovirus glycoprotein B and structural basis for membrane fusion.
ChainA
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 WCY A Y153 Y155 N750 F752 Y68 Y70 N619 F621
BS02 WCY A G711 L712 D714 I730 G734 G735 G580 L581 D583 I599 G603 G604
External links
PDB RCSB:7kdp, PDBe:7kdp, PDBj:7kdp
PDBsum7kdp
PubMed33674318
UniProtP13201|GB_HCMVT Envelope glycoprotein B (Gene Name=gB)

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