Structure of PDB 7jqq Chain A

Receptor sequence
>7jqqA (length=327) Species: 10756 (Salasvirus phi29) [Search protein sequence]
SLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVR
RYKPELAKVSNYFNDVAQEFPDHELVVKGRRFYIDGKLAGWAIPLSVWQS
EKSNAYPNVSTIVFDEFIREKDNSNYIPNEVSALLNLMDTVFRNRERVRC
ICLSNAVSVVNPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDFSSERRKT
RFGRLIDGTEYGEMSLDNQFIGDSQVFIEKRSKDSKFVFSIVYNGFTLGV
WVDVNQGLMYIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLA
SAFMNGYLRFDNQVIRNIAYELFRKMR
3D structure
PDB7jqq A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA.
ChainA
Resolution4.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A Q10 L13 S14 Y15 D16 R17 Y37 D237 K239 H268 D269 P270 T272 Q7 L10 S11 Y12 D13 R14 Y34 D234 K236 H265 D266 P267 T269
BS02 dna A R83 N292 R330 R80 N289 R327
BS03 AGS A F6 G27 I28 G29 K30 S31 Y32 D68 F3 G24 I25 G26 K27 S28 Y29 D65
BS04 MG A S31 D118 S28 D115
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0019073 viral DNA genome packaging

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Molecular Function
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Biological Process
External links
PDB RCSB:7jqq, PDBe:7jqq, PDBj:7jqq
PDBsum7jqq
PubMed33962953
UniProtP11014|PKG16_BPPH2 DNA packaging protein (Gene Name=16)

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