Structure of PDB 7fdy Chain A

Receptor sequence
>7fdyA (length=338) Species: 562 (Escherichia coli) [Search protein sequence]
AEIYNKDGNKVDLYGKAVGLHYFSKGENSYGGNGDMTYARLGFKGETQIN
SDLTGYGQWEYNFQGNNSEGADAQTGNKTHLAFAGLKYADVGSFDYGRNH
GVVYDALGYTDMLPEFGGDTAYSDDFFVGHVGGVATYRNSNFFGLVDGLN
FAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEA
QPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFAN
KTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYY
FNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
3D structure
PDB7fdy Design and directed evolution of noncanonical beta-stereoselective metalloglycosidases.
ChainA
Resolution3.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A H82 H132 H80 H130
Gene Ontology
Molecular Function
GO:0001530 lipopolysaccharide binding
GO:0005216 monoatomic ion channel activity
GO:0005515 protein binding
GO:0008289 lipid binding
GO:0015288 porin activity
GO:0042802 identical protein binding
GO:0042912 colicin transmembrane transporter activity
GO:0097718 disordered domain specific binding
Biological Process
GO:0006811 monoatomic ion transport
GO:0015031 protein transport
GO:0034220 monoatomic ion transmembrane transport
GO:0043213 bacteriocin transport
GO:0070207 protein homotrimerization
Cellular Component
GO:0009279 cell outer membrane
GO:0016020 membrane
GO:0034702 monoatomic ion channel complex
GO:0046930 pore complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7fdy, PDBe:7fdy, PDBj:7fdy
PDBsum7fdy
PubMed36369431
UniProtP02931|OMPF_ECOLI Outer membrane porin F (Gene Name=ompF)

[Back to BioLiP]