Structure of PDB 7dkw Chain A

Receptor sequence
>7dkwA (length=771) Species: 858215 (Thermoanaerobacterium xylanolyticum LX-11) [Search protein sequence]
DKISHKIDIPDSAWTIGIGEKFKNAGHPNVKYPMIDDSYVQGAPLGGFGA
GTIGRTYNGGFSRWHLEIGKNKYTTVYANQFSVFQKVEGNKDGVAQVLYA
GEPENGYLSSWKWDYPKESGMYYALYPNSWYTYTNKDLPVQLAVKQFSPI
IPYNYKETSYPVAVFKWTAYNPTNKNVDVSIMFTWQNMIGFFGKQVNVNS
GNFNKIIKDKSKDSEIVAAVMGNISNDNEEWNGEYSIGVKKVPGVDISYK
AKFVTTGDGSDLWHEFSKNGILDNKDDETPTKQDGIGSAIAVNFKLQPGQ
TIEVPFALSWDLPIMKFGGGDKWYKMYTKYFGKNGKNSFAILKEALNNYQ
KWEKMIDDWQKPILSNKSKPDWYKTALFNELYYLADGGTAWENGKVGEKD
KRTNNMFGLLGCFDYNYYETLDVRFYGSFPLVMLWPDIEKQVMRQFADTI
NVQDSSEFKVGSNGAMAVKKVQGMIPHDLGSSYALPWIKINAYDWQNPNI
WKDLNSKYVLLVYRDYVLTGKTDKEFLKYTWKSVKTALDKLKEMDKDNDG
IPDNEGIPDQTYDTWSMKGTSAYCGSLWLAALKAAQEIGKVLKDNEAYIK
YNEWYKIAQQNFEKELWNGEYYNFDTESDHKDSIMADQLAGQWYADILRL
GDILPKDHVQKALKKIYEFNVMKFENGKMGAVNGMRPDGIVDESDIQAQE
VWTGVTYALASFMKYRGMTEEAYNTAYGVYKMTYDKSGKGYWFRTPEAWT
KDGNYRASMYMRPLSIWSMEV
3D structure
PDB7dkw Structural basis for transglycosylation in glycoside hydrolase family GH116 glycosynthases.
ChainA
Resolution1.78 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.45: glucosylceramidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC A Y62 W525 Y32 W495
BS02 GOL A D452 H507 T591 D422 H477 T561
BS03 GOL A T566 D569 T536 D539
BS04 CA A D575 D577 D579 I581 D583 D545 D547 D549 I551 D553
Gene Ontology
Molecular Function
GO:0004348 glucosylceramidase activity
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008422 beta-glucosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:7dkw, PDBe:7dkw, PDBj:7dkw
PDBsum7dkw
PubMed34019851
UniProtF6BL85

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