Structure of PDB 7dbe Chain A

Receptor sequence

>7dbeA (length=330) Species: 2183910 (Rhodobacter sp. 140A)

NQLTILEAGLDEIICETVPGEAIQYSRYSLDRTSPLAGGCAWIEGAFVPA
AAARISIFDAGFGHSDVTYTVAHVWHGNFFRLEDHVERFLAGAEKMRIPM
PATKAEIMDLMRGCVSKSGLREAYVNVCVTRGYGRKPGTLEALESQLYVY
AIPYLWVFSPIRQIEGIDAVIAQSVRRSPANVMDPWIKNYQWGDLVRATF
EAQERGARTAFLLDSDGFVTEGPGFNVLMVKDGTVFTAARNVLPGITRRT
ALEIARDFGLQTVIGDVTPEMLRGADEIFAATTAGGVTPVVALDGAPVGA
GVPGDWTRKIRTRYWQMMDEPSDLIEPVSY

3D structure

• PDB: 7dbe Biochemical and Structural Characterization of an (R)-Selective Transaminase in the Asymmetric Synthesis of Chiral Hydroxy Amines.
• Chain: A
• Resolution: 1.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	PLP	A	R89 K191 E224 G227 F228 N229 L246 G248 I249 T250 T286	R88 K188 E221 G224 F225 N226 L243 G245 I246 T247 T283

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Nov 27 22:32:29 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7dbe', asym_id = 'A', title = 'Biochemical and Structural Characterization of a...he Asymmetric Synthesis of Chiral Hydroxy Amines.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7dbe', asym_id='A', title='Biochemical and Structural Characterization of a...he Asymmetric Synthesis of Chiral Hydroxy Amines.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003824', uniprot = '', pdbid = '7dbe', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824', uniprot='', pdbid='7dbe', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>