Structure of PDB 7d6r Chain A

Receptor sequence
>7d6rA (length=282) Species: 562 (Escherichia coli) [Search protein sequence]
REFTIDFSTQQSYVSSLNSIRTEISTPLEHISQGTTSVSVINHTPPGSYF
AVDIRGLDVYQARFDHLRLIIEQNNLYVAGFVNTATNTFYRFSDFTHISV
PGVTTVSMTTDSSYTTLQRVAALERSGMQISRHSLVSSYLALMEFSGNTM
TRDASRAVLRFVTVTAEALRFRQIQREFRQALSETAPVYTMTPGDVDLTL
NWGRISNVLPEYRGEDGVRVGRISFNNISAILGTVAVILNCQPECQITGD
RPVIKINNTLWESNTAAAFLNRKSQFLYTTGK
3D structure
PDB7d6r Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin.
ChainA
Resolution1.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.2.22: rRNA N-glycosylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y77 V78 D94 F95 S112 Y114 T115 E167 T199 Y77 V78 D94 F95 S112 Y114 T115 E167 T199
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0030598 rRNA N-glycosylase activity
GO:0090729 toxin activity
Biological Process
GO:0017148 negative regulation of translation
GO:0035821 modulation of process of another organism

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Molecular Function
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Biological Process
External links
PDB RCSB:7d6r, PDBe:7d6r, PDBj:7d6r
PDBsum7d6r
PubMed33972673
UniProtQ8XBV2

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