Structure of PDB 7d4d Chain A

Receptor sequence

>7d4dA (length=506) Species: 5547 (Trichoderma viride) [Search protein sequence]

EELPPRKVCIVGAGVSGLYIAMILDDLKIPNLTYDIFESSSRTGGRLYTH
HFTDAKHDYYDIGAMRYPDIPSMKRTFNLFKRTGMPLIKYYLDGENTPQL
YNNHFFAKGVVDPYMVSVANGGTVPDDVVDSVGEKLQQAFGYYKEKLAED
FDKGFDELMLVDDMTTREYLKRGGPKGEAPKYDFFAIQWMETQNTGTNLF
DQAFSESVIDSFDFDNPTKPEWYCIEGGTSLLVDAMKETLVHKVQNNKRV
EAISIDLDAPDDGNMSVKIGGKDYSGYSTVFNTTALGCLDRMDLRGLNLH
PTQADAIRCLHYDNSTKVALKFSYPWWIKDCGITCGGAASTDLPLRTCVY
PSYNLGDTGEAVLLASYTWSQDATRIGSLVKDAPPPKEDELVELILQNLA
RLHAEHMTYEKIKEAYTGVYHAYCWANDPNVGGAFALFGPGQFSNLYPYL
MRPAAGGKFHIVGEASSVHHAWIIGSLESAYTAVYQFLYKYKMWDYLRLL
LERWQY

3D structure

PDB

7d4d Structural basis of enzyme activity regulation by the propeptide of l-lysine alpha-oxidase precursor from Trichoderma viride .

Chain

Resolution

2.29 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	A	G91 G93 V94 S95 E117 S118 G124 R125 G142 A143 M144 R145 Y146 R328 V329 T363 C367 S394 W506 N511 A515 F516 E545 A552 W553 I554 S557	G12 G14 V15 S16 E38 S39 G45 R46 G63 A64 M65 R66 Y67 R249 V250 T284 C288 S315 W425 N430 A434 F435 E464 A471 W472 I473 S476
BS02	LYS	A	R145 D289 F293 Y446 W448 F516 A552 W553	R66 D210 F214 Y367 W369 F435 A471 W472

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0001716	L-amino-acid oxidase activity
GO:0016491	oxidoreductase activity

	Biological Process
GO:0009063	amino acid catabolic process

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:7d4d, PDBe:7d4d, PDBj:7d4d
PDBsum	7d4d
PubMed	33554108
UniProt	A0A0G4DCU0

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