Structure of PDB 6ymg Chain A

Receptor sequence
>6ymgA (length=309) Species: 680 (Vibrio campbellii) [Search protein sequence]
MNYWWVSQKQTFKQEFEGGYMWSPKENKNGTQSHYYNNMTLVQPGDVVFS
FANGLILSVGIARSHAYSYNKPTEFGVAGADWANDGWKIDLEYHLVENKI
RPKAHIDFIRPYLPQKYSPLQDNGNGNQAYLFSVPHELASKVVELIGSEA
EEVIFGFADTTEITTTADAIECQISNDASIDETEKHQLVKSRRGQGIFRS
RLEQVESRCRVTGVQLKNHLIASHIKPWAVSNNQERLDGHNGLLLAPHVD
HLFDKGFISFEDNGEMIVSEKLNLDVLKAWSISQGNYGYFSKQQQEYMCY
HRENVFKKL
3D structure
PDB6ymg Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA.
ChainA
Resolution3.14 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A S7 Q8 K9 Q10 T11 E15 N27 K28 Y36 F51 W82 N125 G126 N127 Q128 Y130 S7 Q8 K9 Q10 T11 E15 N27 K28 Y36 F51 W82 N125 G126 N127 Q128 Y130
BS02 dna A Y35 K116 Y117 Q121 N127 Q128 Y35 K116 Y117 Q121 N127 Q128
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