Structure of PDB 6ygw Chain A

Receptor sequence
>6ygwA (length=372) Species: 264203 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821) [Search protein sequence]
SMVEADRPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKAL
KPETVRATGADIILGNTYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSG
GYQVMSLSSLTKQSEEGVTFKHMLSPERSIEIQHLLGSDIVMAFDECTPY
PATPSRAASSMERSMRFAKRSRDAFDSRKEQAENAALFGIQQGSVFENLR
QQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMG
VGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL
KPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKI
RDSISEGRFSQFAQDFRARYFA
3D structure
PDB6ygw Mutation study on tRNA-guanine transglycosylase within 19F NMR experiments for conformational change analysis
ChainA
Resolution1.16 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.4.2.29: tRNA-guanosine(34) preQ1 transglycosylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C318 C320 C323 H349 C307 C309 C312 H338
Gene Ontology
Molecular Function
GO:0008479 tRNA-guanosine(34) queuine transglycosylase activity
GO:0016757 glycosyltransferase activity
GO:0016763 pentosyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0002099 tRNA wobble guanine modification
GO:0006400 tRNA modification
GO:0008033 tRNA processing
GO:0008616 queuosine biosynthetic process
GO:0101030 tRNA-guanine transglycosylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ygw, PDBe:6ygw, PDBj:6ygw
PDBsum6ygw
PubMed
UniProtP28720|TGT_ZYMMO Queuine tRNA-ribosyltransferase (Gene Name=tgt)

[Back to BioLiP]