Structure of PDB 6xxi Chain A

Receptor sequence
>6xxiA (length=330) Species: 9606 (Homo sapiens) [Search protein sequence]
STQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPL
HADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAG
GVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWL
MPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFS
PALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGG
GVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVD
AQPVKVYADASLVFPLLVAETFAQKMDAFM
3D structure
PDB6xxi Half Way to Hypusine-Structural Basis for Substrate Recognition by Human Deoxyhypusine Synthase.
ChainA
Resolution1.679 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.5.1.46: deoxyhypusine synthase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 NAD A T104 S105 N106 T131 A132 G133 D238 G282 G283 N307 T308 A309 D342 A343 T71 S72 N73 T98 A99 G100 D205 G249 G250 N274 T275 A276 D309 A310
BS02 NAD A G284 H288 D313 S315 S317 G251 H255 D280 S282 S284
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0034038 deoxyhypusine synthase activity
GO:0042802 identical protein binding
Biological Process
GO:0006412 translation
GO:0008216 spermidine metabolic process
GO:0008284 positive regulation of cell population proliferation
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine
GO:0042102 positive regulation of T cell proliferation
GO:0042593 glucose homeostasis
GO:0046203 spermidine catabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6xxi, PDBe:6xxi, PDBj:6xxi
PDBsum6xxi
PubMed32235505
UniProtP49366|DHYS_HUMAN Deoxyhypusine synthase (Gene Name=DHPS)

[Back to BioLiP]