Structure of PDB 6xm8 Chain A

Receptor sequence
>6xm8A (length=483) Species: 627192 (Sphingobium sp. SYK-6) [Search protein sequence]
AHFPDTPAFTGFNAPSRIECDIPNLVHEGTIPPELNGAFFRVQPDPQFPP
RLGDDISFNGDGMITRFHIHDGQCDIKQRWAKTNKWKLENAAGKALFGSY
RNPLTDDESVKGEYRSTANTNAFVFAGKLWAMKEDSPSLTMDPATMETFG
FEKFGGKMTGQTFTAHPKVDPLTGNMVAIGYAASGLCTDDVCLYEISPDG
ELIYEAWFKVPYYCMMHDFGVTKDYLVLHIVPSIGSWDRLEKGLPHFGFD
TTLPVYLGIIPRRADLKQEDIRWFKRENCFASHVMNAFQEGTKVHVDVPE
AENNMFPFFPDVHGAPFNPQQAMSRLTRWTVDMASNSDEFDSVTRLTETA
GEFPRIDDRMTGLPYRYGWMLEMDMKRPVELGGFLMNCLFLKDHQTGAEQ
HWWCGPTSSLQEPAFIPRSKDAPEGDGWIVQVCNRLADHKSDLLIFEALD
IEKGPVATVHLPFALRFGLHGNWANAEEIGLAA
3D structure
PDB6xm8 Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6.
ChainA
Resolution1.85 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.13.11.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CO A H167 H218 H284 H476 H166 H217 H283 H470
BS02 V5P A F59 Y101 N120 T121 K134 M216 H218 H284 M306 E353 F354 L475 F58 Y100 N119 T120 K133 M215 H217 H283 M305 E352 F353 L469
Gene Ontology
Molecular Function
GO:0010436 carotenoid dioxygenase activity
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0016121 carotene catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:6xm8, PDBe:6xm8, PDBj:6xm8
PDBsum6xm8
PubMed33965373
UniProtG2IQT9

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