Structure of PDB 6wu6 Chain A

Receptor sequence

>6wu6A (length=470) Species: 409438 (Escherichia coli SE11)

KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQG
GITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEH
MGLPFSRLDDGRIYQRPFGGQARTAAAADRTGHALLHTLYQQNLKNHTTI
FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQ
STTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPPTCHYMMGGIPTKVTGQ
ALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGL
HLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECM
QHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELD
NLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMT
RRSVNMEPKLRPAFPPKIRT

3D structure

• PDB: 6wu6 A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
• Chain: A
• Resolution: 3.6 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	A	G14 A15 G16 G17 A18 T46 S48 A49 Q50 Y165 T202 D221 H354 E388 R399 G402 N403 S404 L405 L408	G13 A14 G15 G16 A17 T45 S47 A48 Q49 Y155 T192 D211 H237 E271 R282 G285 N286 S287 L288 L291

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 16:34:42 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6wu6', asym_id = 'A', title = "A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins. "

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6wu6', asym_id='A', title="A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins. ")

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0006099,0016491,0016627,0022900,0050660', uniprot = '', pdbid = '6wu6', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0006099,0016491,0016627,0022900,0050660', uniprot='', pdbid='6wu6', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>