Structure of PDB 6wbo Chain A

Receptor sequence
>6wboA (length=555) Species: 187878 (Thermococcus gammatolerans) [Search protein sequence]
HMRYSELAELYRRLEKTTLKTLKTKFVADFLKKTPDDLLEIVPYLILGKV
FPDWDERELGVGEKLLIKAVSMATGVPEKEIENSIKDTGDLGESVALALK
KRRQKSFFSQPLTIKRVYNTFVKVAEASGEGSQDRKMKYLANLFMDAGPE
EGKYIARTVLGTMRTGVAEGILRDAIAEAFKVKVELVERAYMLTSDFGYV
AKIAKLEGNEGLSKVSIQIGKPIRPMLAQNAASVKDALIEMGGEAAFEIK
YDGARVQVHRDGDKVIIYSRRLENVTRSIPEIVEAVKASLKPSKVIVEGE
LVAVGENGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVNGESL
IDTKFTERRKRLEESVEESDKIKLAEQLVTKKVDEAEEFYKRALELGHEG
LMAKRLDAIYEPGNRGKKWLKIKPTMENLDLVIIGAEWGEGRRAHLLGSF
LVGAYDPESGEFVPVGKVGSGFTDEDLVEFTKMLKPLIIREEGKFVEIEP
KVVIEVTYQEIQKSPKYKSGFALRFPRYVALRENKSPEEADTIERVAQLY
ELQER
3D structure
PDB6wbo New structural DNA-Ligase from Thermococcus gammatolerans
ChainA
Resolution2.65 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.5.1.6: DNA ligase (ATP or NAD(+)).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP A I259 K260 R265 E310 F350 M412 K414 W429 K431 K433 I249 K250 R255 E300 F340 M402 K404 W419 K421 K423
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003909 DNA ligase activity
GO:0003910 DNA ligase (ATP) activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006266 DNA ligation
GO:0006273 lagging strand elongation
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0051301 cell division
GO:0071897 DNA biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:6wbo, PDBe:6wbo, PDBj:6wbo
PDBsum6wbo
PubMed
UniProtC5A7K8

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