Structure of PDB 6w98 Chain A

Receptor sequence
>6w98A (length=1312) Species: 1185650 (Mycobacteroides abscessus subsp. abscessus) [Search protein sequence]
TYRLDSSALSRRWLAVAAAVSLLLTFSQSPGQISPDTKLDLAINPLRFAA
RALNLWSSDLPFGQAQNQAYGYLFPHGAFFSLGHLLGVPAWVTQRLWWAL
LIVAGFWGLIRVAEALGIGTRGSRIIAAVAFALSPRVLTTLGAISSETLP
MMLAPWVLLPLILTFQGRMSPRRAAALSAVAVALMGAVNAVATALACGVA
VIWWLAHRPNRTWWRFTAWWIPCLALASTWWIVALLIFGKISPKFLDFIE
STSLTEVLRGTVTQSAMVIATTMLAAAGMAGLAMRGMPARGRLVAVLLIG
LVLLRNVHKLEPLIRLPLILGLAHALSRIPLPASVPVNRAVAFAIVLLVA
LAASTSLAWTGRLVPRGGFDAIPGYWNDTAHWLADHDTGGRALVVPGAPF
AIQTWGLTRDEPLQALGQTPWGVRDSIPLTPPETIRAIDSVQQLFAAGRP
SDGLADTLREQGISYLVVRNDLDPDTSRSARPILVHHTIEGSPGLTKVAQ
FGDPVGAGAVEGFVADSDLRPQYPAVEIYAVGANDHDGEPYFTDIDTMPR
VAGGPEALLRLNERRRQLNEPPLGPSLLATDAAQAGLRPGPAVVTDTPLA
RETDYGRVDDHSSAIRAPGDKRRTFNRVPDYPATGVPLVNGSWTGGTITA
SSSASDSTALPNVAPGTSTAAAIDRDNATSWVSSSLEAALGQWIRIDLDR
PITNAILTVTPSATALGAQVRRLEVETDNGTTSVRFDEPGQPLNIALRPG
ETTWVKVTATGTDDGTSGVQFGVTELSLTQYDAAGFAHTVDLRHSATVPP
PPAGDNPLGWDLGSPLQGRSGCAPSPQRLRCAATLSLAPEEPGTFIRTLT
VPQPVSLTPRLWVRARPGPQLRDLIQQPGTTVATGDSDVIDPQGSSYAAT
DGDPGTVWTAPQDSVQRLHLPSLVIKLPKPTAIGAIRLRPSRTEVPAHPK
QVAINLGDGPQLRSIDPKADVTELALHPSITDTITVTVTDWTDIIDRTAL
GFDQLKPPGIAEVIALDADHRPIAPADNAANSKRKITIGCNRGPILALAG
RFVPMSITATVRELLDGTVIQATPCDTSPIATGAGIQDVTVNPSQQFIVD
GVQLTAAATEPASATMTVAPKGAWGPDRREVTAEPSAHERVLAVPESINP
GWAARDAQGHLLTPVRVNGWQQGWVLPAGDGGKITLTFGLNTWYRAGLFG
GLALLPILACLALLPALPPVAPWCAGPAAGVAVLAALTAISGISGMAVGL
AALAFKVWTRWPLRAVTAAGVYLAGGSLLLAGAALSRHHSWWIQLLALIS
VASVALAAVRLP
3D structure
PDB6w98 Cryo-EM Structures and Regulation of Arabinofuranosyltransferase AftD from Mycobacteria.
ChainA
Resolution2.9 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A A735 D738 D740 T743 T838 E839 A671 D674 D676 T679 T774 E775
BS02 CA A A962 D965 D967 T970 A1075 A898 D901 D903 T906 A1011
BS03 6OU A G316 R317 I324 G291 R292 I299
BS04 PNS A R315 T1336 A1386 R1389 R290 T1267 A1307 R1310
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 30 09:24:04 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6w98', asym_id = 'A', title = 'Cryo-EM Structures and Regulation of Arabinofuranosyltransferase AftD from Mycobacteria.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6w98', asym_id='A', title='Cryo-EM Structures and Regulation of Arabinofuranosyltransferase AftD from Mycobacteria.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0016740', uniprot = '', pdbid = '6w98', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016740', uniprot='', pdbid='6w98', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>