Structure of PDB 6vyp Chain A

Receptor sequence
>6vypA (length=110) Species: 8355 (Xenopus laevis) [Search protein sequence]
TMQTARKSTGGKAPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI
AQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDI
QLARRIRGER
3D structure
PDB6vyp Crystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate.
ChainA
Resolution4.99 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A H39 R42 R72 R83 F84 Q85 R116 V117 T118 M120 H15 R18 R48 R59 F60 Q61 R92 V93 T94 M96
BS02 dna A R40 Y41 V46 R49 R63 K64 L65 P66 R69 R83 R16 Y17 V22 R25 R39 K40 L41 P42 R45 R59
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:6vyp, PDBe:6vyp, PDBj:6vyp
PDBsum6vyp
PubMed32396821
UniProtP84233|H32_XENLA Histone H3.2

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