Structure of PDB 6vwz Chain A

Receptor sequence
>6vwzA (length=625) Species: 882 (Nitratidesulfovibrio vulgaris str. Hildenborough) [Search protein sequence]
KTIRSRSIWDDAHAMLEKAKAEGISTVWDRAAEQTPACKFGELGTCCRNC
IMGPCRIANRKDGKMRLGVCGADADVIVARNFGRFIAGGAAGHSDHGRDL
IETLEAVAEGKAPGYTIRDVAKLRRIAAELGVADAATRPAHDVAADLVTI
CYNDFGSRRNALAFLARAPQVRRDLWQRLGMTPRGVDREIAEMMHRTHMG
CDNDHTSLLVHAARTALADGWGGSMIGTELSDILFGTPRPRQSTVNLGVL
RKDAVNILVHGHNPVVSEMILAATREPAVRQAAQDAGAADINVAGLCCTG
NELLMRQGIPMAGNHLMTELAIVTGAADAIVADYQCIMPSLVQIAACYHT
RFVTTSPKGRFTGATHVEVHPHNAQERCREIVMLAIDAYTRRDPARVDIP
SQPVSIMSGFSNEAILEALGGTPKPLIDAVVAGQIRGFVGIVGCNNPKIR
QDSANVTLTRELIRRDIMVLATGCVTTAAGKAGLLVPEAASKAGEGLAAV
CRSLGVPPVLHMGSCVDNSRILQLCALLATTLGVDISDLPVGASSPEWYS
EKAAAIAMYAVASGIPTHLGLPPNILGSENVTAMALHGLQDVVGAAFMVE
PDPVKAADMLEAHIVARRARLGLTS
3D structure
PDB6vwz The Solvent-Exposed Fe-S D-Cluster Contributes to Oxygen-Resistance inDesulfovibrio vulgarisNi-Fe Carbon Monoxide Dehydrogenase.
ChainA
Resolution2.488 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.2.7.4: anaerobic carbon-monoxide dehydrogenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 A C51 C54 M56 G57 C59 V73 C74 R84 M203 C47 C50 M52 G53 C55 V69 C70 R80 M199
BS02 CUV A H266 C301 C302 C340 G447 C448 G477 C478 C519 Y553 K556 H262 C297 C298 C336 G443 C444 G473 C474 C515 Y549 K552
BS03 SF4 A C42 G45 C50 R60 C38 G41 C46 R56
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004601 peroxidase activity
GO:0016151 nickel cation binding
GO:0016491 oxidoreductase activity
GO:0043885 anaerobic carbon-monoxide dehydrogenase activity
GO:0046872 metal ion binding
GO:0050418 hydroxylamine reductase activity
GO:0051537 2 iron, 2 sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0006091 generation of precursor metabolites and energy
GO:0042542 response to hydrogen peroxide
GO:0098869 cellular oxidant detoxification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6vwz, PDBe:6vwz, PDBj:6vwz
PDBsum6vwz
PubMed32655979
UniProtQ72A99

[Back to BioLiP]