Structure of PDB 6vt1 Chain A

Receptor sequence
>6vt1A (length=339) Species: 5762 (Naegleria gruberi) [Search protein sequence]
MGVRKLATIRTAGEITPIAGAEAIECCHVDGWTCVIKKGEFKQGDRGVYF
EIDSFIKEDNDRYPMLSKQVIDYEGQRGTRLRTARLRGQLSQGLFLPMDR
FPELASNQVGDDVTEILGITKWEPPISTNLSGEILGEFPTFISKTDQERV
QNLIPQIEENKGQKFEVTVKLAGSSMTVYRKDDHIGVCGRNWELRETATN
AQWHAARRNKMIEGLQFLNRNLALQGEIIGESIQGNLEKLKGQDFYLFDI
YDIDKAQYLTPIERQSLVKQLNDNGFTVKHVPILDDLELNHTAEQILAMA
DGPSLNKNVKREGLVFKRLDGKFSFKAISNAYLEKHKDR
3D structure
PDB6vt1 Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
ChainA
Resolution2.381 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP A T145 T168 K170 L171 S175 R190 E227 F248 V315 K317 K326 T145 T168 K170 L171 S175 R190 E227 F248 V315 K317 K326
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6vt1, PDBe:6vt1, PDBj:6vt1
PDBsum6vt1
PubMed32315072
UniProtD2W2Z5

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