Structure of PDB 6vm6 Chain A

Receptor sequence
>6vm6A (length=438) Species: 525244 (Acinetobacter sp. ATCC 27244) [Search protein sequence]
AIARVGFGYQDAFVLRSLPLWLSQSAFSHIVSEALSDIEVCYFSSEKSLH
VMYEAKNHSLTATEFWDEIRRFKSLFDTHPKNFIWFNLVCPSYNTAISPL
ISKIDRLRVSVNGRSEYLDWCVGKKIDFSLAEFALDYVGFITFNSENSES
IFLSEIQDTINIELLRSQVKQLKDQFKNLISRSSFGPIYRKDFENFICHA
LEEDRSQWLLDPIKINLSASSSQYQDLNLDISDFNGPDRAQKTSSDWNSL
IKKAVSIGDFIHNSGDRRTLLIDGKQRMSTACMLGYVFSATRNFLLEIEH
NGLIYRTDDHKQKEGQFFTKIEAVEPQGETEAIVAIGFPTAIGKDIDSTI
NEVKSLPRLNLESSHAIDNMETLNLAVREAKSALVSFKSENKLSKLHLFI
KAPSVFAMVLGHRLNGICDIQLYDWVDGQYIPTAELNL
3D structure
PDB6vm6 CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.
ChainA
Resolution2.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A N259 K299 Q300 R301 M302 H324 P363 D369 A390 I391 I424 K425 A426 P427 S428 W449 Y454 N235 K275 Q276 R277 M278 H300 P339 D345 A366 I367 I400 K401 A402 P403 S404 W425 Y430
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0004518 nuclease activity
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0051607 defense response to virus

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6vm6, PDBe:6vm6, PDBj:6vm6
PDBsum6vm6
PubMed32544385
UniProtC0VHC9|CAP4_ACIS2 CD-NTase-associated protein 4 (Gene Name=cap4)

[Back to BioLiP]