Structure of PDB 6vfv Chain A

Receptor sequence
>6vfvA (length=222) Species: 9606 (Homo sapiens) [Search protein sequence]
ENDNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRNGQVTYRLLEA
EVGRAGGAVSTYVSVDPATGAIYALRSFDYETLRQLDVRIQASDGGSPQL
SSSALVQVRVLDQNDHAPVLVHPAPANGSLEVAVPGRTAKDTVVARVQAR
DADEGANGELAFELQQQEPREAFAIGRRTGEILLTGDLSQEPPGRVFRAL
LVISDGGRPPLTTTATVSFVVT
3D structure
PDB6vfv Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins.
ChainA
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MAN A Q551 Q559 S561 Q91 Q99 S101
BS02 CA A N462 N464 D494 D496 N500 D554 N2 N4 D34 D36 N40 D94
BS03 CA A E479 D539 E541 D575 E19 D79 E81 D115
BS04 CA A E479 E541 D572 Q573 D575 D613 E19 E81 D112 Q113 D115 D153
BS05 CA A N574 H576 D611 D613 N617 D665 N114 H116 D151 D153 N157 D205
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:6vfv, PDBe:6vfv, PDBj:6vfv
PDBsum6vfv
PubMed32101743
UniProtO95206|PCDH8_HUMAN Protocadherin-8 (Gene Name=PCDH8)

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