Structure of PDB 6vdp Chain A

Receptor sequence
>6vdpA (length=304) Species: 1914 (Streptomyces lavendulae) [Search protein sequence]
AQVATVPFRLGRPEELPGTLDELRAAVSARAGEAVRGLNRPGARTDLAAL
LAATERTRAALAPVGAGPVGDDPSESEANRDNDLAFGIVRTRGPVAELLV
DAALAALAGILEVAVDRGSDLEDAAWQRFIGGFDALLGWLADPHSAPRPA
TVPGAGPAGPPVHQDALRRWVRGHHVFMVLAQGCALATACLRDSAARGDL
PGAEASAAAAEALMRGCQGALLYAGDANREQYNEQIRPTLMPPVAPPKMS
GLHWRDHEVLIKELAGSRDAWEWLSAQGSERPATFRAALAETYDSHIGVC
GHFV
3D structure
PDB6vdp A novel catalytic heme cofactor in SfmD with a single thioether bond and a bis -His ligand set revealed by a de novo crystal structural and spectroscopic study.
ChainA
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.11.2.5: 3-methyl-L-tyrosine peroxygenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HEC A F194 C234 M266 G268 W271 H274 L277 Y310 H313 C317 F320 F177 C217 M249 G251 W254 H257 L260 Y293 H296 C300 F303
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0017000 antibiotic biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6vdp, PDBe:6vdp, PDBj:6vdp
PDBsum6vdp
PubMed34163669
UniProtB0CN28|SFMD_STRLA 3-methyl-L-tyrosine peroxygenase (Gene Name=sfmD)

[Back to BioLiP]