Structure of PDB 6uer Chain A

Receptor sequence
>6uerA (length=187) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVI
MRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFK
DFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIV
LLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI
3D structure
PDB6uer DNA mismatches reveal conformational penalties in protein-DNA recognition.
ChainA
Resolution2.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 dna A V29 F57 A58 F74 S76 Q116 N117 L147 F148 I152 R154 V161 L163 T173 V18 F46 A47 F63 S65 Q105 N106 L136 F137 I141 R143 V150 L152 T162
BS02 dna A Q26 N27 F57 R63 T70 L72 T82 F148 P149 F165 S167 K169 V171 Q15 N16 F46 R52 T59 L61 T71 F137 P138 F154 S156 K158 V160
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006352 DNA-templated transcription initiation
Cellular Component
GO:0005634 nucleus

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6uer, PDBe:6uer, PDBj:6uer
PDBsum6uer
PubMed33087930
UniProtP28147|TBP1_ARATH TATA-box-binding protein 1 (Gene Name=TBP1)

[Back to BioLiP]