Structure of PDB 6ubf Chain A

Receptor sequence
>6ubfA (length=479) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
RTSRNCSSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLV
PEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNEGL
YMRTWKEIEMSANNFKTLKRSDFLRAVSKGHGDPDISVQGFVAMLRACNV
NARLIMSCQPPDFTNMKIDTSLNGNNAYKDMVKYPIFWCEVWDKFSKKWI
TVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRR
YAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFRR
DESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKV
LKVYAKRDIADLKSARQWYMNGRILKVIKRTEEEDERLYSFEDTELYIPP
LASASGEITKNTFGNIEVFAPTMIPGNCCLVENPVAIKAARFLGVEFAPA
VTSPVLSGIVVAKWLREAIETAIDGIEFI
3D structure
PDB6ubf Kinetic gating mechanism of DNA damage recognition by Rad4/XPC.
ChainA
Resolution4.597 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A R129 C131 N134 S437 V438 Q439 H472 Q495 R4 C6 N9 S309 V310 Q311 H344 Q367
BS02 dna A N130 C131 N293 M294 K295 N443 Q455 T516 N5 C6 N165 M166 K167 N315 Q327 T381
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003684 damaged DNA binding
Biological Process
GO:0006289 nucleotide-excision repair
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ubf, PDBe:6ubf, PDBj:6ubf
PDBsum6ubf
PubMed25562780
UniProtP14736|RAD4_YEAST DNA repair protein RAD4 (Gene Name=RAD4)

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