Structure of PDB 6ss9 Chain A

Receptor sequence

>6ss9A (length=276) Species: 9606 (Homo sapiens) [Search protein sequence]

GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAP
WIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG
CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAA
HVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT
LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVP
SGQEQRYTCHVQHEGLPKPLTLRWEP

3D structure

PDB

6ss9 Identification of a superagonist variant of the immunodominant Yellow fever virus epitope NS4b214-222by combinatorial peptide library screening.

Chain

Resolution

2.7 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	A	Y7 F9 E63 K66 V67 H70 V76 D77 T80 Y84 Y99 Y116 T143 K146 Q155 L156 Y159 Y171	Y7 F9 E63 K66 V67 H70 V76 D77 T80 Y84 Y99 Y116 T143 K146 Q155 L156 Y159 Y171
BS02	peptide	A	H151 E154	H151 E154

External links

PDB	RCSB:6ss9, PDBe:6ss9, PDBj:6ss9
PDBsum	6ss9
PubMed	32645549
UniProt	P04439\|HLAA_HUMAN HLA class I histocompatibility antigen, A alpha chain (Gene Name=HLA-A)

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