Structure of PDB 6o3j Chain A

Receptor sequence

>6o3jA (length=220) Species: 9606 (Homo sapiens) [Search protein sequence]

EVQLVQSGGEVKRPGSSVTVSCKATGGTFSTLAFNWVRQAPGQGPEWMGG
IVPLFSIVNYGQKFQGRLTIRADKSTTTVFLDLSGLTSADTATYYCAREG
EGWFGKPLRAFEFWGQGTVITVSSASTKGPSVFPLAPSSGTAALGCLVKD
YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTY
ICNVNHKPSNTKVDKKVEPK

3D structure

PDB

6o3j An MPER antibody neutralizes HIV-1 using germline features shared among donors.

Chain

Resolution

3.416 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	A	T31 A33 N35 W47 G50 I51 V52 I56 N58 E95 F100 G100A K100B P100C R100E	T31 A33 N35 W47 G50 I51 V52 I57 N59 E99 F104 G105 K106 P107 R109
BS02	44E	A	T28 F29 S30	T28 F29 S30

External links

PDB	RCSB:6o3j, PDBe:6o3j, PDBj:6o3j
PDBsum	6o3j
PubMed	31772165

[Back to BioLiP]