Structure of PDB 6nee Chain A

Receptor sequence

>6neeA (length=250) Species: 32630 (synthetic construct)

SRKFFVGGNWKMNGTLESIKALVETLNSAQLDPNTEVVVAPPAIYLPFAR
SKLKKPKEIQVAAQNCYTKPNGAFTGEISAEMLKDLGVPWVILGHSERRT
IFGESDELIAEKVKYALDQGLKVIACIGETLEEREAGKTMEVVARQILKA
IADKIKDWSNVVIAYEPVWAIGTGKVATPEQAQEVHAALRKWLKENVSPE
VAESTRIIYGGSVNAANCKELAKQPDIDGFLVGGASLKAPEFVDIINARQ

3D structure

• PDB: 6nee Structural, thermodynamic and catalytic characterization of an ancestral triosephosphate isomerase reveal early evolutionary coupling between monomer association and function.
• Chain: A
• Resolution: 1.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	PGH	A	K12 H96 E167 I172 G173 G212 S213 L232 G234 G235	K11 H95 E166 I171 G172 G211 S212 L231 G233 G234

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 22 12:15:22 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6nee', asym_id = 'A', title = 'Structural, thermodynamic and catalytic characte...upling between monomer association and function. '

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6nee', asym_id='A', title='Structural, thermodynamic and catalytic characte...upling between monomer association and function. ')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0004807,0006096', uniprot = '', pdbid = '6nee', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004807,0006096', uniprot='', pdbid='6nee', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>