Structure of PDB 6ndy Chain A

Receptor sequence
>6ndyA (length=314) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKP
TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK
QLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGN
DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT
PCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSE
TRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE
DDLLKQEQFTRDFG
3D structure
PDB6ndy Structure of Vps4 with circular peptides and implications for translocation of two polypeptide chains by AAA+ ATPases.
ChainA
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A K205 W206 M207 E245 E247 K90 W91 M92 E130 E132
BS02 ADP A D134 V135 A136 G176 T177 G178 S180 Y181 M307 G336 S337 D19 V20 A21 G61 T62 G63 S65 Y66 M192 G221 S222
BS03 BEF A P175 G176 N277 P60 G61 N162
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:6ndy, PDBe:6ndy, PDBj:6ndy
PDBsum6ndy
PubMed31184588
UniProtP52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 (Gene Name=VPS4)

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