Structure of PDB 6n6h Chain A

Receptor sequence
>6n6hA (length=181) Species: 666 (Vibrio cholerae) [Search protein sequence]
MSFSDQNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQ
PESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEG
KSPICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRWQPEVLK
EFSKTGSHLALDDIRESIAELQFYRKAVFKI
3D structure
PDB6n6h A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
ChainA
Resolution1.757 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.1.15.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A E14 M15 L18 W61 C62 H66 N107 S108 Q111 S135 H158 E14 M15 L18 W61 C62 H66 N107 S108 Q111 S135 H158
Gene Ontology
Molecular Function
GO:0000175 3'-5'-RNA exonuclease activity
GO:0003676 nucleic acid binding
GO:0004527 exonuclease activity
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters
Biological Process
GO:0006259 DNA metabolic process
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6n6h, PDBe:6n6h, PDBj:6n6h
PDBsum6n6h
PubMed31225796
UniProtQ9KV17|ORN_VIBCH Oligoribonuclease (Gene Name=orn)

[Back to BioLiP]