Structure of PDB 6n6f Chain A

Receptor sequence
>6n6fA (length=180) Species: 666 (Vibrio cholerae) [Search protein sequence]
SFSDQNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQP
ESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGK
SPICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRWQPEVLKE
FSKTGSHLALDDIRESIAELQFYRKAVFKI
3D structure
PDB6n6f A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
ChainA
Resolution1.735 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.15.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A E14 M15 G17 L18 W61 C62 H66 N107 S108 Q111 S135 H158 E13 M14 G16 L17 W60 C61 H65 N106 S107 Q110 S134 H157
Gene Ontology
Molecular Function
GO:0000175 3'-5'-RNA exonuclease activity
GO:0003676 nucleic acid binding
GO:0004527 exonuclease activity
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters
Biological Process
GO:0006259 DNA metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6n6f, PDBe:6n6f, PDBj:6n6f
PDBsum6n6f
PubMed31225796
UniProtQ9KV17|ORN_VIBCH Oligoribonuclease (Gene Name=orn)

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