Structure of PDB 6n6d Chain A

Receptor sequence
>6n6dA (length=181) Species: 666 (Vibrio cholerae) [Search protein sequence]
MSFSDQNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQ
PESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEG
KSPICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRWQPEVLK
EFSKTGSHLALDDIRESIAELQFYRKAVFKI
3D structure
PDB6n6d A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
ChainA
Resolution1.534 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.15.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A E14 M15 G17 L18 D59 W61 C62 H66 S108 Q111 S135 H158 E14 M15 G17 L18 D59 W61 C62 H66 S108 Q111 S135 H158
Gene Ontology
Molecular Function
GO:0000175 3'-5'-RNA exonuclease activity
GO:0003676 nucleic acid binding
GO:0004527 exonuclease activity
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters
Biological Process
GO:0006259 DNA metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6n6d, PDBe:6n6d, PDBj:6n6d
PDBsum6n6d
PubMed31225796
UniProtQ9KV17|ORN_VIBCH Oligoribonuclease (Gene Name=orn)

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