Structure of PDB 6mji Chain A

Receptor sequence
>6mjiA (length=270) Species: 10090 (Mus musculus) [Search protein sequence]
KNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQ
GKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCE
MYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQG
TSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPGHRQLVCH
VSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEA
GLACRVKHSSLGGQDIILYW
3D structure
PDB6mji 4"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.
ChainA
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FUC A S114 G130 N165 S109 G125 N160
BS02 JTD A C12 S28 V30 W63 F70 Y73 S76 D80 F120 W133 D153 G155 T156 F171 C7 S23 V25 W58 F65 Y68 S71 D75 F115 W128 D148 G150 T151 F166 PDBbind-CN: -logKd/Ki=7.29,Kd=51.5nM
External links
PDB RCSB:6mji, PDBe:6mji, PDBj:6mji
PDBsum6mji
PubMed30556652
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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