Structure of PDB 6miy Chain A

Receptor sequence

>6miyA (length=271) Species: 10090 (Mus musculus) [Search protein sequence]

KNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQ
GKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCE
MYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQG
TSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSHRQLVC
HVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEE
AGLACRVKHSSLGGQDIILYW

3D structure

PDB

6miy 4"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.

Chain

Resolution

2.75 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FUC	A	S114 W129 G130	S109 W124 G125
BS02	JTV	A	F10 Q14 F70 Y73 S76 D80 A102 F120 W133 L150 D153 G155 T156 L163 F171	F5 Q9 F65 Y68 S71 D75 A97 F115 W128 L145 D148 G150 T151 L158 F166	PDBbind-CN: -logKd/Ki=7.73,Kd=18.5nM

External links

PDB	RCSB:6miy, PDBe:6miy, PDBj:6miy
PDBsum	6miy
PubMed	30556652
UniProt	P11609\|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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