Structure of PDB 6lyb Chain A

Receptor sequence
>6lybA (length=260) Species: 2209 (Methanosarcina mazei) [Search protein sequence]
ALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEE
RENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQI
FRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH
LEEFTMLGFQQMGSGCTRENLESIITDFLNHLGIDFKIVGGDTLDVMHGD
LELSSAGVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSE
SYYNGISTNL
3D structure
PDB6lyb Probing the Active Site of Deubiquitinase USP30 with Noncanonical Tryptophan Analogues.
ChainA
Resolution1.90366 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.1.1.26: pyrrolysine--tRNA(Pyl) ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ANP A R330 E332 H338 L339 F342 E396 L397 S398 S399 G421 G423 R426 R142 E144 H150 L151 F154 E202 L203 S204 S205 G227 G229 R232
BS02 MG A E396 S399 E202 S205
BS03 EXR A M300 G419 A420 G421 M112 G225 A226 G227
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0005524 ATP binding
Biological Process
GO:0043039 tRNA aminoacylation

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Molecular Function
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Biological Process
External links
PDB RCSB:6lyb, PDBe:6lyb, PDBj:6lyb
PDBsum6lyb
PubMed32484330
UniProtQ8PWY1|PYLS_METMA Pyrrolysine--tRNA ligase (Gene Name=pylS)

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