Structure of PDB 6l7h Chain A

Receptor sequence

>6l7hA (length=453) Species: 49827 (Glycyrrhiza glabra)

SSIAPHPVVHVALLPSAGMGHLTPFLRLASLLLHQHCHVTLITPQPTVSK
AEEDLLSRFLSAFPQVNQLHFHLPPTDPFFLQFASIRSSSHLLTPLLSSL
TPPLSSFIYDMTLISPLLPIAESLGVPHYILFTSSATMFSFFSYFPTLAK
SESFPGKLDFVEIPGVSVSSIPRSSIPPPLLVPNSLFGKLFMEDSPKLKK
LHGVLVNTFEGIEKLSLEALNGGKVVKGLPPVYGVGPFVPCEFEKVETIS
EWLDEQPSGSVVYVSFGSRTAMGREQLREVGDGLVKSGWRFLWVVKDKIV
DRAEEEGLDGVLGFELVERMVKEKKGLVVKEWVDQSEILGHKAVGGFVSH
CGWNSVVEAAWFGVKILGWPLHGDQKINAEVVAKGGWGVWKEGWDWEGER
LVKGEEIGEAIREVMNDESLVMKATQVKKDARKAISVGGGCEVALQKLME
VWK

3D structure

• PDB: 6l7h Functional Characterization and Structural Basis of an Efficient Di-C-glycosyltransferase fromGlycyrrhiza glabra.
• Chain: A
• Resolution: 1.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	UDP	A	S284 W348 V349 Q351 H366 G368 N370 S371 E374	S268 W332 V333 Q335 H350 G352 N354 S355 E358
BS02	E7F	A	F95 M123 F144 M150 P189 F199 L202 F203 R285 G389 D390	F83 M111 F132 M138 P177 F187 L190 F191 R269 G373 D374
BS03	UDP	A	D89 P190 R285 T286 H388 G389	D77 P178 R269 T270 H372 G373

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 11:46:37 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6l7h', asym_id = 'A', title = 'Functional Characterization and Structural Basis... Di-C-glycosyltransferase fromGlycyrrhiza glabra.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6l7h', asym_id='A', title='Functional Characterization and Structural Basis... Di-C-glycosyltransferase fromGlycyrrhiza glabra.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0008194,0035251', uniprot = '', pdbid = '6l7h', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008194,0035251', uniprot='', pdbid='6l7h', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>