Structure of PDB 6kdu Chain A

Receptor sequence
>6kduA (length=321) Species: 83332 (Mycobacterium tuberculosis H37Rv) [Search protein sequence]
QTAPEVLRQWQALAAEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQ
HPELRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGR
IHAEVGDAAHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNA
RTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPF
ANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALR
AWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQ
RRLGSTSRAPRWAIAYKYPPE
3D structure
PDB6kdu Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity.
ChainA
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.5.1.2: DNA ligase (NAD(+)).
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 AMP A S91 L92 K123 R144 H236 K300 K324 S84 L85 K116 R137 H229 K293 K317
BS02 NMN A Y31 Y32 P37 S40 D41 F44 D45 Y24 Y25 P30 S33 D34 F37 D38
Gene Ontology
Molecular Function
GO:0003911 DNA ligase (NAD+) activity

View graph for
Molecular Function
External links
PDB RCSB:6kdu, PDBe:6kdu, PDBj:6kdu
PDBsum6kdu
PubMed34076591
UniProtP9WNV1|DNLJ_MYCTU DNA ligase A (Gene Name=ligA)

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