Structure of PDB 6kd7 Chain A

Receptor sequence
>6kd7A (length=327) Species: 592029 (Nonlabens dokdonensis DSW-6) [Search protein sequence]
MNTLKSLRTTFLEELKSKVTATEPAGLYDPVHYILDLGGKRLRPLLTLMS
AEMYGATAKDAMNAAIAVEVFHNFTLLHDDIMDAADLRRGKETVHKKWDV
NTGILTGDAMLIMAYRLFEDYDKDKFYQLNKVFSRTALEVCEGQQHDVDF
ETRDDVSVPEYLNMIKLKTSVLVGCALQMGAIIAGVDEKEQELIYDYGIN
LGLAFQLMDDYLDAFGDPETFGKEVGGDIRENKKTYLYLKSIENNDCATE
LKEWFALHFENMTEEQIDEKKETVKVFFEQSGGAKATLDAIESYTQKALK
NIEELSIAPESKKQLTDFSLQLMGRKS
3D structure
PDB6kd7 Crystal structure of geranylgeranyl pyrophosphate synthase (crtE) from Nonlabens dokdonensis DSW-6.
ChainA
Resolution2.0 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) K40 F74 D79 D83 R88 D147 K168 F205 D209 D210
Catalytic site (residue number reindexed from 1) K40 F74 D79 D83 R88 D147 K168 F205 D209 D210
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PPV A R43 H72 R43 H72
BS02 GOL A T75 Q144 K168 T75 Q144 K168
BS03 GOL A T75 M82 Q144 T75 M82 Q144
Gene Ontology
Molecular Function
GO:0004659 prenyltransferase activity
GO:0016740 transferase activity
Biological Process
GO:0008299 isoprenoid biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6kd7, PDBe:6kd7, PDBj:6kd7
PDBsum6kd7
PubMed31427080
UniProtL7W5I6

[Back to BioLiP]