Structure of PDB 6jop Chain A

Receptor sequence
>6jopA (length=280) Species: 1230469 (Nitratiruptor phage NrS-1) [Search protein sequence]
MIMEIPAIKALSRYAQWVIWKKERDTKIPYNPNNGKKASSTDPLAWGDID
EAQAGLVRYGANGLGFVLTKSDPFVFIDLDHVLDENKRVKCEWARQLLKE
IKSYTEISPSGDGLHVVVSGKLPDYIKHKTKFDDGSALEVYESGRYMTIT
GEVFDGRDDIKELDLSILGEFAEHKILDDEAIIDLMKRKGQWPDAPKDGD
DWSSLDMSFANRLAFWCGKDIERMDRIFRQSPLMRQKWDRPTAGSTYGRI
TLKKACDFVDSVYDPALRNESDCPFEPYNE
3D structure
PDB6jop Crystal structures of phage NrS-1 N300-dNTPs-Mg2+complex provide molecular mechanisms for substrate specificity.
ChainA
Resolution2.353 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.7: DNA-directed DNA polymerase.
3.6.4.12: DNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 TTP A K27 D78 D80 S108 P109 S110 H115 R145 Y146 T148 K27 D78 D80 S108 P109 S110 H115 R145 Y146 T148
BS02 MG A D78 D80 D78 D80
BS03 MG A T69 D72 F74 E142 T69 D72 F74 E142
External links
PDB RCSB:6jop, PDBe:6jop, PDBj:6jop
PDBsum6jop
PubMed31176489
UniProtM5AAG8|POL_BPNNR DNA Primase-polymerase (Gene Name=28)

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