Structure of PDB 6jfa Chain A

Receptor sequence
>6jfaA (length=158) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence]
IREILKMGDERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAA
PQIGVDLQLVIFGPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAV
SRHRRIRYQGLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFS
KFGFTEVL
3D structure
PDB6jfa Met-Ala-Ser bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
ChainA
Resolution1.93 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G50 Q55 C103 L104 H145 E146 H149
Catalytic site (residue number reindexed from 1) G47 Q52 C90 L91 H132 E133 H136
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A G48 V49 G50 E101 G102 R110 H145 G45 V46 G47 E88 G89 R97 H132
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6jfa, PDBe:6jfa, PDBj:6jfa
PDBsum6jfa
PubMed
UniProtA0A071LDC0

[Back to BioLiP]