Structure of PDB 6jf4 Chain A

Receptor sequence
>6jf4A (length=148) Species: 470 (Acinetobacter baumannii) [Search protein sequence]
SVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGI
AAPQVYISKRVIIVASPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDER
GQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVER
3D structure
PDB6jf4 K1U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
ChainA
Resolution2.0 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G50 Q55 C103 L104 H145 E146 H149
Catalytic site (residue number reindexed from 1) G49 Q54 C93 L94 H135 E136 H139
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C103 H145 H149 C93 H135 H139
BS02 K1U A N47 G48 V49 G50 Q55 E101 G102 C103 L104 R110 F138 H145 E146 N46 G47 V48 G49 Q54 E91 G92 C93 L94 R100 F128 H135 E136
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6jf4, PDBe:6jf4, PDBj:6jf4
PDBsum6jf4
PubMed
UniProtA0A098SKQ8

[Back to BioLiP]