Structure of PDB 6jdu Chain A

Receptor sequence
>6jduA (length=425) Species: 28344 (Porcine reproductive and respiratory syndrome virus) [Search protein sequence]
SRMCGYCGAPAPYATACGLDVCVYHTHFHQHCPVIIWCGHPAGSGSCSEC
EPPLGKGTSPLDEVLEQVPYKPPRTVIMHVEQGLTPLDPGRYQTRRGLVS
VRRGIRGNEVDLPDGDYASTALLPTCKEINMVAVASNVLRSRFIIGPPGA
GKTHWLLQQVQDGDVIYTPTHQTMLDMIRALGTCRFNVPAGTTLQFPAPS
RTGPWVRILAGGWCPGKNSFLDEAAYCNHLDVLRLLSKTTLTCLGDFKQL
HPVGFDSHCYVFDIMPQTQLKTIWRFGQNICDAIQPDYRDKLMSMVNTTR
VTYVEKPVRYGQVLTPYHRDREDSAITIDSSQGATFDVVTLHLPTKDSLN
RQRALVAITRARHAIFVYDPHRQLQSVFDLPAKGTPVNLAVHRNNREITV
AQALGNGDKFRATDKRVVDSLRAIC
3D structure
PDB6jdu Helicase of Type 2 Porcine Reproductive and Respiratory Syndrome Virus Strain HV Reveals a Unique Structure.
ChainA
Resolution2.81 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C20 H32 H34 C35 C17 H29 H31 C32
BS02 ZN A C7 C10 C25 H28 C4 C7 C22 H25
BS03 ZN A C41 H43 C50 C53 C38 H40 C47 C50
BS04 CA A E66 E69 E63 E66
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008270 zinc ion binding

View graph for
Molecular Function
External links
PDB RCSB:6jdu, PDBe:6jdu, PDBj:6jdu
PDBsum6jdu
PubMed32075207
UniProtJ9XNG9

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