Structure of PDB 6j7i Chain A
Receptor sequence
>6j7iA (length=814) Species:
10116
(Rattus norvegicus) [
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SQDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYT
ALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTP
ATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPS
SGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLL
NIELFEELQALLPSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAH
RYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFY
DWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFEL
GLGDDDGNLEEDFITWREQFWPAVCEFFGVEASSIRQYELVVHEDMDVAK
VYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDI
SDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNK
KHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMAS
SSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYS
IASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPALVPMFVR
KSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYY
GCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDRE
HLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVK
KLMTKGRYSLDVWS
3D structure
PDB
6j7i
Crystal structure of a NADPH-cytochrome P450 oxidoreductase (CYPOR) and heme oxygenase 1 fusion protein implies a conformational change in CYPOR upon NADPH/NADP+binding.
Chain
A
Resolution
3.3 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB)
S632 C805 D850 W852
Catalytic site (residue number reindexed from 1)
S600 C766 D811 W813
Enzyme Commision number
1.14.14.18
: heme oxygenase (biliverdin-producing).
1.6.2.4
: NADPH--hemoprotein reductase.
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
HEM
A
H25 E29 Y134 T135 G139 S142 K179 R183 N210
H16 E20 Y125 T126 G130 S133 K170 R174 N201
BS02
FAD
A
H494 R599 R629 Y630 Y631 S632 C647 A648 V649 Y653 G663 V664 A665 T666 W852
H462 R567 R597 Y598 Y599 S600 C615 A616 V617 Y621 G631 V632 A633 T634 W813
BS03
FMN
A
S265 Q266 T267 T269 A270 A317 T318 Y319 G320 L352 G353 N354 Y357 D387
S233 Q234 T235 T237 A238 A285 T286 Y287 G288 L320 G321 N322 Y325 D355
Gene Ontology
Molecular Function
GO:0003958
NADPH-hemoprotein reductase activity
GO:0004128
cytochrome-b5 reductase activity, acting on NAD(P)H
GO:0004392
heme oxygenase (decyclizing) activity
GO:0008941
nitric oxide dioxygenase NAD(P)H activity
GO:0009055
electron transfer activity
GO:0010181
FMN binding
GO:0016491
oxidoreductase activity
GO:0016787
hydrolase activity
GO:0019899
enzyme binding
GO:0047726
iron-cytochrome-c reductase activity
GO:0050660
flavin adenine dinucleotide binding
GO:0050661
NADP binding
Biological Process
GO:0003420
regulation of growth plate cartilage chondrocyte proliferation
GO:0006788
heme oxidation
GO:0007584
response to nutrient
GO:0009410
response to xenobiotic stimulus
GO:0009437
carnitine metabolic process
GO:0009725
response to hormone
GO:0009812
flavonoid metabolic process
GO:0019395
fatty acid oxidation
GO:0022900
electron transport chain
GO:0032332
positive regulation of chondrocyte differentiation
GO:0043066
negative regulation of apoptotic process
GO:0043602
nitrate catabolic process
GO:0045542
positive regulation of cholesterol biosynthetic process
GO:0045880
positive regulation of smoothened signaling pathway
GO:0046210
nitric oxide catabolic process
GO:0070988
demethylation
GO:0071371
cellular response to gonadotropin stimulus
GO:0071372
cellular response to follicle-stimulating hormone stimulus
GO:0071375
cellular response to peptide hormone stimulus
GO:0071548
response to dexamethasone
GO:0090031
positive regulation of steroid hormone biosynthetic process
GO:0090181
regulation of cholesterol metabolic process
GO:0090346
cellular organofluorine metabolic process
Cellular Component
GO:0005737
cytoplasm
GO:0005783
endoplasmic reticulum
GO:0005789
endoplasmic reticulum membrane
GO:0005829
cytosol
GO:0016020
membrane
GO:0043231
intracellular membrane-bounded organelle
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:6j7i
,
PDBe:6j7i
,
PDBj:6j7i
PDBsum
6j7i
PubMed
30883732
UniProt
P00388
|NCPR_RAT NADPH--cytochrome P450 reductase (Gene Name=Por);
P06762
|HMOX1_RAT Heme oxygenase 1 (Gene Name=Hmox1)
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